What if Sega preferred Eternal Champions?/Ratchet: A Mega Man Movie

Plot
Taking Place between Season 2 and 3. Dr. Weil hires Reploid Aristocrats Ratchet, Java and Python to work for his regime. Ratchet devises a plan to kidnap Ciel and install a genotype microelf in her body. thus making the Resistance work for Neo Arcadia.

However, once the plan is successful. Ratchet helps Cial(Ciel's long lost twin sister who was always under the care of Neo Arcadia) and the Resistance to take over Neo Arcadia from within. forcing Dr. Weil to go to exile once more. and Prometheus and Pandora to search for Serpent, Craft and the Four Guardians. meanwhile, Vent and Aile go missing while searching for Ciel. leading Sho and Lito(who left the resistance after they took over Neo Arcadia) to look for the Four Guardians.

During their seach, Sho and Lito encounter Neige. who is looking for Aile, who recently joined the Caravan. Neige tells them Aile went looking for Vent and Ciel. while Neige and the Caravan don't like the Resistance. Neige senses that someone from Neo Arcadia have coerced the Resistance to join their ranks.

With Cial posing as her sister and leading Neo Arcadia. Ratchet targets humans, working class reploids and middle class repolids. in contrast to Weil who targeted anyone. giving them the illusion that Cial and Ratchet are more lenient. Prometheus and Pandora encounter Harpuia and Leviathan, who while concerned about Cial, don't trust them. however, the four have to join forces when they're being ambushed by Java and Python.

Even after going to hiding, Resistance Pantheons manage to capture Aile and imprison her and put her in a cell with Ciel. there, tha latter tells the former that they caught Vent aswell. the latter feels guilty and blames herself for what's going on.

While Sho, Lito and the Caravan are trying to infiltrate Neo Arcadia, they get ambushed by Resistance Pantheons, who lead them to Java and Python. before they could be inprisoned abd tried. Fefnir, Phantom and Craft show up and take out the Pantheons while challenging Java and Python. with their gut feeling being proven correct, Cerveau, Colbor, Faucon and Hirondelle lead a rebellion within the Resistance, which further helps the Caravan to get inside Neo Arcadia. with Serpeant being aided by Zero and Axl going close to the prison halls. he is approached by none other that Ratchet himself, who tells him how much he was always envious and resentful of him. and the two fight.

With Ratchet, Java and Python winning their fights. Cial effortessly fights and defeats Neige and Sho, imprisoning them and Lito. Vent talks with Sho and Lito in their cell, the three plan their escape and to rescue the others. which prooves to be surprisingly successful. with Vent rescuing Ciel. they get caught by Cial and Ratchet. with Cial telling Ciel how much she was envious and bitter to wards her all these years. Ciel says to Cial she never knew she had a sister and tells her to redeem herself and that she forgives her. before the two sisters can bury their hatchet. Ratchet tells Cial the truth, that she wasn't Ciel's long lost sister. but an alter ego that stemmed from the microefl and Ciel's cyberelf. causing Cial to question her own existance. the Caravan manage to break out and free the Resistance, the Four Guardians, Craft, Prometheus and Pandora. Zero and Axl try to fight Ratchet. but once more, he proves to be too powerful.

Ratchet states that the microelf he created for Cial gives him and anyone he desires power that is fed from negative energy. leading Vent to fight Ratchet on his own. however, before Ratchet's powerful stike hit him. Cial jumps in and gives up her life to stop Ratchet. however, this puts Ciel in dire straights.

with Vent almost giving up, X tells him that everyone is giving him enough positive energy to keep on fighting. with the new found powers, Vent manages to stop Ratchet for good.

Characters

 * Lito (CV: Masami Suzuki and Eliza Dushku)
 * Sho (CV: Noriko Hidaka and James Galdonfini)
 * Ratchet (CV: Norio Wakamoto and Alan Rickman)
 * Cial (CV: Megumi Hayashibara and Helena Bonham Carter)
 * Java (CV: Kazue Ikura and Winona Ryder)
 * Python (CV: Issei Futamata and Michael K. Williams)
 * Vent (CV: Minami Takayama and Stephanie Nadolny)
 * Aile (CV: Yuko Miyamura and Colleen Clinkenbeard)
 * Ciel (CV: Megumi Hayashibara and Laura Bailey)
 * Neige (CV: Kotono Mitsuishi and Monica Rial)
 * Passy (CV: Naoko Matsui and Tiffany Volmer)
 * X (CV: Takahiro Sakurai and Sean Schemmel)
 * Zero (CV: Ryotaro Okiayu and Christopher Sabat)
 * Axl (CV: Minami Takayama and Eric Vale)
 * Sage Harpuia (CV: Megumi Ogata and Chris Patton)
 * Fairy Leviatha (CV: Yuka Imai and Luci Christian)
 * Fighting Fefnir (CV: Kazuya Nakai and Dameon Clark)
 * Hidden Phantom (CV: Tetsu Inada and Mike McFarland)
 * Dr. Weil (CV: Chikao Otsuka and Ian McDiarmid)
 * Girouette (CV: Keiji Fujiwara and Vic Mignogna)
 * Cerveau (CV: Yoshito Yasuhara and R. Bruce Elliott)
 * Colbor (CV: Wataru Takagi and Sonny Strait)
 * Hirondelle (CV: Tetsuya Iwanaga and Greg Ayres)
 * Faucon (CV: Fumihiko Tachiki and Greg Dulcie)
 * Elpizo (CV: Hirotaka Suzuoki and John Gremillion)
 * Serpent (CV: Daisuke Gori and Phil Parsons)
 * Craft (CV: Koichi Yamadera and Kyle Hebert)
 * Prometheus (CV: Shinichiro Miki and Chuck Huber)
 * Pandora (CV: Yumi Touma and Stephanie Young)